ショートコース: 脳波データのSemantic Description

脳波データによるオープンサイエンス促進のためのメタデータ記述の向上と標準化を目的として、本ショートコースを開催し、教材を公開致します。なお、本ショートコースは、九州工業大学にて9/25-28開催の "NIX-odML Global Workshop & Hackathon 2017 in Japan" のサテライトイベントして開催されました。

開催日   2017年10月2日(月)- 6日(金)

会場    理化学研究所脳科学総合研究センター 脳中央棟内 (建物番号C51)

   埼玉県和光市広沢2-1          <アクセス>

講師             Roman Mouček, Ph.D., Assistant Professor  (University of West Bohemia, Pilsen, Czech Republic)

Ing. Jiří Vaněk, IT Specialist (University of West Bohemia, Pilsen, Czech Republic)

共催

理化学研究所脳科学総合研究センター神経情報基盤センター

新学術領域「非線形発振現象を基盤としたヒューマンネイチャーの理解(略称:オシロロジー)」

INCF Funded grants in 2016: "Standardized workflow of human EEG in NIX and odML"

 

日程概要        

Date    Time                    Topics Room
Oct. 2 11:00 - 12:00  BSI Forum "Semantics for Neuroinformatics 3F seminar room
  12:00 - 12:30  Free Discussion 3F seminar room
  13:30 - 17:00
  • Discussion and preparation on work environments among participants of the short course
  • Significance of Metadata
C206, NIJC meeting room
Oct. 3

10:00 -17:00

(-12:00 core )

  • Tutorial on XML metadata file at EEGbase
C206, C207 NIJC meeting room
Oct. 4

10:00 -17:00

(-12:00 core)

  • How to edit and export metadata on EEGbase
  • Review of the EEG experimental information to be included in metadata
C207, NIJC meeting room
Oct. 5

10:00 -17:30

(-12:00 core)

  • Introduction of odML and NIX tools on G-Node Github
  • How to install odML editor on individual desktop environments
  • odML terminologies
C206, NIJC meeting room
Oct. 6

10:00 -18:00

(-12:30 core)

  • Installation of odML tools for the use of sharable data
  • Creation and conversion of metadata of participants' data from odML xml to NIX format
  • Extraction of EEG data into NIX format on Matlab using nix bindings
C206, NIJC meeting room
  13:30 - 16:00
  • Guidance: how to prepare data and meadata for publication
C206, NIJC meeting room

 

参考資料と教材

Documents of the short course

Title outline Creator type Link
  • Semantic description of EEG data
Presentation document of BSI Forum on 2017/10/02 Roman Moucek pdf Download
  • Whole group RIKEN metadata model
Material used on 2017/10/04 Roman Moucek png Preview
  • Whole group template odML outpu
Material used on 2017/10/05 Roman Moucek xml Download
  • Summary : short course of semantic description of EEG data
Summary of the short course on 2017/10/02-06 Jiri Vanek and Roman Moucek pptx Download
 

Reference Papers and Thesis

  • "Dataformat for electrophysiological experiments " Jiri Barek Master thesis Pilsen 2015  PDF
  • "Ontology Development in EEG/ERP Domain" INg. Petr Jezek, Pilsen 2012 PDF
  • "Semantic framework for mapping object-oriented model to semantic web langueages",  Petr Jezek and Roman Moucek, frontiers in Neuroinformatics, Feb 2015 Volume 9 Article 3, doi:10.3389/fninf.2015.00003  PDF
  • DATA NOTE " Developmental coordination disorder in children  -experimental work and data annotation", Lukas Vareka, Petr Bruha, Roman Moucek, Pavel mautner, Ladislav Cepicka and Irena Holeckova, GigaScience, 6, 2017, 1-6,doi:10.1093/gigascience/gix002  PDF
  • Data Descriptor: "Event-related potential data from a guess the number brain-computer interface experiment on school children", R Moucek, L.Veraka, T. Prokop, J. Stebetak and P. Bruha, SCIENTIFIC DATA 4.160121, DOI:10.1038/sdata.2016.121 PDF

odML metadata

odML and NIX tools

RDF/ EEGBase

プリンタ用画面

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