Advances in Neuroinformatics IV

 

4th INCF Japan Node International Workshop Advances in Neuroinformatics 2016 and
14th INCF Nodes Workshop Abstracts

January 2017

Edited by
Teiichi FURUICHI, Yoko YAMAGUCHI and Linda LANYON

Published by
Neuroinformatics Japan Center, RIKEN Brain Science Institute
2-1 Hirosawa Wako, Saitama 351-0198, Japan

Official page
URL: https://www.neuroinf.jp/aini2016

 

 

 

 

 

 

 

  PDF (5.2MB)

 

Each paper with DOI is available below.

 

Table of Contents

Keynote Lecture

 1

Databasing brain gene expression information
Teiichi FURUICHI (PDF)

 2

The interface between data and knowledge:  Multi-scale data integration in neuroscience
Maryann E. MARTONE (PDF)

 3

Potential Contribution of AI to Neuro-informatics
Junichi TSUJII (PDF)

 4

Benefits of comprehensive data management for efficient data access, reproducibility, and data sharing
Thomas WACHTLER (PDF)

 5

   

Oral Session I Whole Brain Imaging for Approaches to Functions and Anatomy

 6

MRI morphometry in Alzheimer’s disease
Hiroshi MATSUDA (PDF)

 7

Data and Model Driven EEG/fMRI fusion with an emphasis on Brain Connectivity
Pedro A. VALDÉS-SOSA (PDF)

 8

NIRS-SPM: statistical parameter mapping for near infrared spectroscopy
Jong Chul YE (PDF)

 9

Reverse Engineering Macro-scale Human Brain Dynamics
Okito YAMASHITA (PDF)

10

Computational neuroanatomy of the human visual white matter
Hiromasa TAKEMURA (PDF)

11

   

Oral Session II  Multi-dimensional Theoretical Neuroscience

12

A large-scale simulation of the basal ganglia-thalamocortical circuit on K computer for understanding Parkinson's motor symptoms
Jun IGARASHI, Osamu SHONO, Jan MOREN, Junichiro YOSHIMOTO, Kenji DOYA (PDF)

13

Toward building an artificial cerebellum
Tadashi YAMAZAKI (PDF)

14

Criticality in event cascades spreading through inhomogeneous networks
Shigeru SHINOMOTO, Tomokatsu ONAGA (PDF)

15

Supercomputing interaction of spinal neuron pools and the wholebody musculoskeletal system
Yoshihiko NAKAMURA (PDF)

16

On a role for competitions in computational neuroscience
Stephen EGLEN, Catherine CUTTS, JJ Johannes HJORTH, David C STERRATT, David J WILLSHAW (PDF)

17

   

Oral Session III Asian and Pacific Neuroinformatics I

18

Towards Clinical Neuroinformatics in Malaysia
Ahmad Fadzil Mohd HANI (PDF)

19

Next-Generation Waxholm Space for Rodent+ Neuroinformatics
James GEE (PDF)

20

Brain-inspired Intelligence and Its Applications in Intelligent Robotics
Yi ZENG (PDF)

21

The Joint China Cuba Neuroinformatics Collaboratory
Pedro A. VALDÉS-SOSA (PDF)

22

   

Oral Session IV Asian and Pacific Neuroinformatics II

23

Brain connectivity and dynamics: highly comparative time-series analysis of neuroscience data, and gene expression patterns of
brain connectivity

Ben D. FULCHER,  Alex FORNITO (PDF)

24

Investigating neural correlates of human trust in machine using a theory-of-mind game
Suh-Yeon DONG, Bo-Kyeong KIM, Kyeongho LEE, Soo-Young LEE (PDF)

25

Integration of Neuroinformatics Platforms in INCF Japan Node
Yoko YAMAGUCHI (PDF)

26

   

Oral Session V Utilization of Ontology for Data Sharing and Mining

27

Toward a map of whole scientific literature to navigate open science
Kim Jin-DONG (PDF)

28

Text Mining for Neuroscience Papers
Yoshinobu KANO (PDF)

29

Semantic Web technologies to enhance scientific research
Hideaki TAKEDA (PDF)

30

Linked Brain Data: a Web-scale Knowledge Platform for Brain and Neuroscience
Yi ZENG (PDF)

31

   

Oral Session VI International Neuroinformatics

32

The Neuroscience Knowledge Space:  A shared global platform for integrative neuroscience
Maryann E. MARTONE, Linda LANYON, Jeff GRETHE, Sean HILL, Tom GILLESPIE, Willy WONG (PDF) 

33

Center-TBI and International TBI Projects
Jeffrey GRETHE, Anita BANDROWSKI, Michael CHIU, Tom GILLESPIE, James GO, Yueling LI,
Burak OZYURT, Maryann E. MARTONE (PDF) 

34

German Neuroinformatics Node: Neuroinformatics for efficient data management in neurophysiology
Thomas WACHTLER, Christian KELLNER, Michael SONNTAG, Adrian STOEWER, Andrey SOBOLEV,
Jan GREWE (PDF)

35

Recent developments in the UK node
Stephen EGLEN, Leslie SMITH (PDF)

36

   

Poster Session

37

Visiome Platform
Shunji SATOH, Yoshimi KAMIYAMA, Shin'ya NISHIDA, Shigeki NAKAUCHI, Izumi OHZAWA, Takao SATO, Akiyoshi KITAOKA,
Hiroshi ASHIDA, Hayaru SHOUNO, Kazushi MARUYA, Kenchi HOSOKAWA, Manabu TANIFUJI, Satoshi SHIOIRI, Yoko YAMAGUCHI,
Shiro USUI (PDF) 

38

BCI Developmental Tools Available for Online EEG Data Acquisition and Time-Frequency Analyses by Using the Wavelet Lifting Scheme
Balbir SINGH, Mayu ICHIKI, Guangyi AI, Hiroaki WAGATSUMA (PDF)

39

A Simultaneous Recording of EEGs and the Eye-Tracking System based on Multitask Operation Design Compatible with
Driving Distractions

Mayu ICHIKI, Guangy AI, Jonathan Shi Khai OOI, Siti Anom AHMAD, Hiroaki WAGATSUMA (PDF)

40

Linking INCF Japan Node Platforms with Application Networks based on Garuda Platform
Yoshiyuki ASAI , Samik GHOSH, Nikolaos TSORMAN, Hiroaki WAGATSUMA (PDF)

41

Ontology-Based Search Server (ObSS) Extends Availability of Neuroinformatics Data by Listing Relevant Metadata if it is
Unfamiliarly Indexed

Yoshiyuki ASAI, Kyota KAMIYOSHI, Yoshiyuki KIDO, Taishin NOMURA, Hiroaki WAGATSUMA (PDF)

42

ERP Topography of the effects of Music Therapy for children with severe neurological disorders
Maria L BRINGAS, Mrielle BESSON, Pedro A ROJAS, Pedro A. VALDÉS-SOSA (PDF)

43

On the neural circuits mediating sense to action - Insight from physiology and numerical modeling
Andreas KARDAMAKIS, Sten GRILLNER (PDF)

44

Community Detection and Mean Field Approximation for Dimension Reduction of Spiking Network Models
Carlos Enrique GUTIERREZ, Junichiro YOSHIMOTO, Kenji DOYA (PDF)

45

A Strategy to infer hidden sources behind multiple neural recording data for neural circuit inference
Ildefons MAGRANS DE ABRIL, Junichiro YOSHIMOTO, Kenji DOYA (PDF)

46

Analysis on the mouse gait patterns by using a neuro-musculoskeletal model
Satoshi OOTA, Yosuke IKEGAMI, Nobunori KAKUSHO, Koh AYUSAWA, Akihiko MURAI, Atsushi YOSHIKI, Yuko Okamura-OHO,
Hideo YOKOTA, Yoshihiko NAKAMURA
(PDF) 

47

A novel approach for repetitive sequential activity detection
Keita H. WATANABE, Tatsuya HAGA, Tomoki FUKAI (PDF)

48

Efficient numerical simulation of neuron models with spatial structure on graphics processing units
Tsukasa TSUYUKI, Yuki YAMAMOTO, Tadashi YAMAZAKI (PDF) 

49

Honeybee neurons responsive to the pulsed vibration produced by waggle dance
H. AI, K. KAI, H. WATANABE, T. ITOH, A. KUMARASWAMY, P. RAUTENBERG, T. WACHTLER, H. IKENO (PDF)

50

The Invertebrate Brain Platform (IVB-PF) -updates of IVBPF in 2016-
Daisuke MIYAMOTO, Tomoki KAZAWA, Hidetoshi IKENO, Yoko YAMAGUCHI, Ryohei KANZAKI (PDF)

51

The Cerebellar Platform and its recent innovation
Shinji KAKEI, Tadashi YAMAZAKI, Yutaka HIRATA, Soichi NAGAO, Takeru HONDA, Yoko YAMAGUCHI (PDF)

52

Development of an on-line simulation environment for computational neuroscience
Hidetoshi IKENO, Tadashi YAMAZAKI, Takayuki KANNON, Yoshihiro OKUMURA, Yoshimi KAMIYAMA, Akito ISHIHARA,
Keiichiro INAGAKI, Yutaka HIRATA, Shunji SATOH, Hiroaki WAGATSUMA, Yoshiyuki ASAI, Yoko YAMAGUCHI, Robert McDOUGAL,
Rixin WANG, Luis MARENCO, Thomas MORSE, Gordon SHEPHERD, Shiro USUI
(PDF) 

53

Cloud computing for clinical brain analytics
Eric Tatt Wei HO, Muhd Juwaini ABD RAHMAN, Ahmad Fadzil Mohd HANI (PDF)

54

Brain decoding can be improved by diffusion imaging based registration
Takuya FUCHIGAMI, Yumi SHIKAUCHI, Ken NAKAE, Manabu SHIKAUCHI, Shin ISHII (PDF)

55

Lending Global Fiber-Tracking to the Tracing Of Dense Neurites in Fluorescence Micrographs
Henrik SKIBBE, Shin ISHII (PDF)

56

Recent activities of Neuroimaging Platform
Hideki KASHIOKA (PDF)

57

Mathematical modeling and dynamical analysis using structural and functional connectivity
Hiromichi TSUKADA, Hiroaki HAMADA, Ken NAKAE, Shin ISHII, Junichi HATA, Hideyuki OKANO, Kenji DOYA (PDF)

58

Parallelization of the registration method for ISH images into the 3D standard brain atlas
Daisuke MIYAMOTO, Hidetoshi IKENO, Yuko Okamura-OHO, Yoshihiro OKUMURA, Nobuyuki MUNEMURA, Akira SATO,
Yoko YAMAGUCHI, Ryohei KANZAKI , Teiichi FURUICHI (PDF)

59

RIKEN MetaDatabase: a life-science database integration and publication platform based on the Semantic Web
Norio KOBAYASHI, Yoko YAMAGUCHI, Hiroshi MASUYA (PDF)

60

Hypotheses of proximity-rule generation during visual search tasks
Akihiro MASAOKA, Yuta MAEDA, Takeshi KOHAMA (PDF)

61

Theory of STDP in Dynamic Boltzmann Machines for Learning Temporal Patterns
Sakyasingha DASGUPTA, Takayuki OSOGAMI (PDF)

62

Transcriptional signatures of connectome topology in the mouse brain
Ben D. FULCHER, Alex FORNITO (PDF)

63

Brain Transcriptome Database (BrainTx)
Akira SATO, Nobuyuki MUNEMURA, Yoshitake SANO, Yo SHINODA, Tetsushi SADAKATA, Noriyuki MORITA, Michisuke YUZAKI,
Takafumi INOUE, Mitsuhiro HASHIMOTO, Hayato OHWADA, Hirozumi NISHIBE, Yoko YAMAGUCHI, Teiichi FURUICHI (PDF)

64

Finding unknown disease-related genes by comparing Random Forest Results to Secondary Data in Medical Science Study
Takahiro KOIWA Kazutaka NISHIWAKI, Katshutosi KANAMORI, Hayato OHWADA (PDF)

65

Finding a Disease-Related non-coding RNA Using Random Forest
Takahiro KOIWA, Kazutaka NISHIWAKI, Katshutosi KANAMORI, Hayato OHWADA (PDF)

66

The report from Hackathon working group in the J-node: INCF Japan Node Hackathon 2016 April
Tomoki KAZAWA, Yoshihiro OKUMURA, Yoko MORII, Daisuke MIYAMOTO, Yoshiyuki ASAI, Hidetoshi IKENO, Akira SATO,
Yoko YAMAGUCHI (PDF)

67

INCF Japan Node Software Center
Takayuki KANNON, Yoshihiro OKUMURA, Yoko YAMAGUCHI (PDF)

68

Development of Research Portal for Multi-scale Heterogeneous Brain Data of Brain/MINDS Project
Yoko MORII, Alexander WOODWARD, Yoshihiro OKUMURA, Masahide MAEDA, Takeshi TAKEUCHI, Hideki OKA, Tsutomu HASHIKAWA,
Masahiko MORITA, Takehiro TAWARA, Masaomi NISHIMURA, Hideo YOKOTA, Yoko YAMAGUCHI (PDF)

69

Data Analysis Pipeline Environment on the Brain/MINDS Research Platform
Masahide MAEDA, Alexander WOODWARD, Hideki OKA, Takeshi TAKEUCHI, Yoko MORII, Yoshihiro OKUMURA,
Yoko YAMAGUCHI (PDF)

70

Big Data Transfer Tool on Brain/BMINDS Research Portal
Takeshi TAKEUCHI, Yoko MORII, Yoshihiro OKUMURA, Yoko YAMAGUCHI (PDF)

71

Brain Science Dictionary
Tomoe FURUYA (PDF)

72

Developing large scale simulation of silkmoth brain using super computer
Tomoki KAZAWA, Daisuke MIYAMOTO, Akihiko GOTO, Tetsuya FUKUDA, Heewon PARK, Ryohei KANZAKI (PDF)

73

   

Demonstration Session

74

HI-brain: a software platform for numerical simulation of the complex vision system by connecting and reusing existing models
Kazuki URABE, Daiki NAKAMURA, Shunji SATOH (PDF)

75

A Workflow to Build and Validate the BCI System Architecture Using the SSVEP Stimulator and Robotic Care Devices Archived
in the Neuroinformatics Platform

Kiyohisa NATSUME, Guangyi AI, Balbir SINGH, Hiroaki WAGATSUMA (PDF)

76

An Explorative Framework to Accelerate Collaborative Data Analysis of Medical Time Series Supported
by the J-Node Platform Data Conversion Service
Hiroaki WAGATSUMA, Yoshiyuki ASAI, Masao MATSUMASHI, Tatsuya MIMA (PDF)

77

Synchronized Motion Generation Derived from Implemented Neurodynamics based on Coupling Nonlinear Oscillators
Toward Perspectives of Suitable Human-Robot Interactions
Motoharu HAGIO, Marine JULIERON, Mayu ICHIKI, Hiroaki WAGATSUMA (PDF)

78

Analysis of motor function of arm movements on Kinect v2
Takeru HONDA, Hirotaka YOSHIDA, Jongho LEE, Shinji KAKEI (PDF)

79

ViBrism DB Platform
Yuko OKAMURA-OHO, Masahiko MORITA, Masaomi NISHIMURA, Takahiro TAWARA, Shuhei WEMLER, Kazuro SHIMOKAWA,
Hideo YOKOTA 
(PDF)

80

Marmoset Atlas with Web 3D Viewer
Alexander WOODWARD, Tsutomu HASHIKAWA, Masahide MAEDA, Yoko YAMAGUCHI (PDF)

81

Computational Methods For Accurate 3D Digital Marmoset Brain Atlas Creation From Histology and MRI
Alexander WOODWARD, Tsutomu HASHIKAWA, Masahide MAEDA, Yoko YAMAGUCHI (PDF)

82

KANPHOS Platform: A database for neural phosphoproteomics with quality control
Junichiro YOSHIMOTO, Takayuki KANNON, Mutsuki AMANO, Tomoki NISHIOKA, Shiro USUI, Kozo KAIBUCHI (PDF)

83

Mouse Behavioral Phenotype Database
Satoko HATTORI, Hirotaka SHOJI, Keizo TAKAO, Tsuyoshi MIYAKAWA (PDF)

84

Consistent data organization made easy: A versatile file format for neuroscience
Christian J KELLNER, Adrian STOEWER, Michael SONNTAG, Andrey SOBOLEV, Jan BENDA, Thomas WACHTLER,
Jan GREWE 
(PDF)

85

Brain Knowledge Engine
Hongyin ZHU, Yi ZENG, Dongsheng WANG (PDF)

86

SciCrunch: A Cooperative And Collaborative Data And Resource Discovery Portal For Scientific Communities
Jeffrey GRETHE, Anita BANDROWSKI, Michael CHIU, Tom GILLESPIE, James GO, Yueling LI, Burak OZYURT,
Maryann E. MARTONE
(PDF)

87

KnowledgeSpace: a community-based encyclopedia for neuroscience
Tom GILLESPIE, Willy WONG, Catherine ZWAHLEN, Silvia JIMENEZ, Jeff GRETHE (PDF) 

88

 


Copyright © 2005-2017