Advances in Neuroinformatics III

 

3rd INCF Japan Node International Workshop Advances in Neuroinformatics 2015 Abstracts

February 2016

Edited by
Ryohei KANZAKI and Yoko YAMAGUCHI

Published by
Neuroinformatics Japan Center, RIKEN Brain Science Institute
2-1 Hirosawa Wako, Saitama 351-0198, Japan

Official page
URL: https://www.neuroinf.jp/aini2015

 

 

 

 

 

 

 
 
PDF



Each paper with DOI is available below.
 

Table of Contents


Keynote Lectures

10           

  Brain Atlasing and BigNeuron Tools
Hanchuan PENG (PDF)
11           
     
  Neuroinformatics and Brain Atlases in the Human Brain Project
Sean HILL (PDF)
12           
     
  Analysis and synthesis of the insect brain
Ryohei KANZAKI (PDF)
13           

Organized Session I   Construction, development of tools for application, and practicality of marmoset brain atlases available anew
14           
  Construction of the marmoset brain atlas in stereotaxic coordinates, on the basis of Nissl stained horizontal sections
Tsutomu HASHIKAWA, 
Reiko NAKATOMI, Atsushi IRIKI, Yoko YAMAGUCHI (PDF)
15           
     
  3D Image Registration Techniques for Multi-modal 3D Brain Atlas Construction
Alexander WOODWARD,
Tsutomu HASHIKAWA, Masahide MAEDA, Yoko YAMAGUCHI (PDF)
16           
     
  Structural and functional mapping of the marmoset brain using MRI
Takaaki KANEKO,  Junichi Hata, Noriyuki Kishi, Hideyuki Okano (PDF)
17           

Organized Session II  Oral Session of Selected Papers
18           
  Modeling a photoreceptor mosaic based on the retinal anatomy
Naomi SAITO, Yoshimi KAMIYAMA (PDF)
19           
     
  Examination of the Bereitschaftspotential for rise to Stand-Up
Balbir SINGH, 
 Hiroaki WAGATSUMA, Kiyohisa NATSUME (PDF)
20           
     
  Brain, Mind and Body: Motion Behaviour Planning, Learning and Control in view of Rehabilitation and Robotics
Tripathi Gyanendra NATH, Hiroaki WAGATSUMA (PDF)
21           

Organized Session III  Methods for Comparison of Maps and Functions
22           
  An automatic registration method for ISH images into the 3D standard brain atlas
Daisuke MIYAMOTO, 
Yuko Okamura-OHO, Teiichi FURUICHI, Ryohei KANZAKI, Hidetoshi IKENO (PDF)
23           
     
  The homology mapping: interspecies functional morphing
Satoshi OOTA,
Yosuke IKEGAMI, Nobunori KAKUSHO, Koh AYUSAWA, Akihiko
MURAI, Atsushi YOSHIKI,  Yuko Okamura-OHO, Hideo YOKOTA, Yoshihiko NAKAMURA (PDF)
24           
     
  Comparative genomics of monoallelically expressed genes
Shinji KONDO,
Hidemasa KATO, Yutaka SUZUKI, Toyoyuki TAKADA,
Masamitsu EITOKU, Toshihiko SHIROISHI, Narufumi SUGANUMA, Hidenori KIYOSAWA  (PDF)
25           
     
  Integration of anatomical and topological maps for functional analysis of the brain
Yuko Okamura-OHO, 
Kazuro SHIMOKAWA, Masahiko MORITA, Masaomi NISHIMURA, Takehiro TAWARA Hideo YOKOTA (PDF)
26           

Special Session  Collaborative Tool developments at INCF Japan Node Hackathon toward Digital Brain Atlas
27           
   Part1 Fundamental softwares for brain atlas  
  Brain Image Registration Using the ANTs Normalization Toolkit
Alexander WOODWARD, Yoko YAMAGUCHI (PDF)
28           
     
  Web-based Application to Visualize 3D Brain Atlas
Keiji MATSUDA, 
Takao OISHI,  Noriyuki HIGO,  Kenichi UENO, Masahide MAEDA, Hideaki KASHIOKA, Ryoji SUZUKI, Shinobu MASAKI, Kang CHENG, Kazuhisa NIKI, Hideo EDA, Yasuyuki TAKI, Hiroki TANABE, Jiro OKUDA, Yoko YAMAGUCHI (PDF)
29           
   
  Part2 Hackathon development  
  Development of protocol and software for registration in situ hybridization image into the standard brain
Hidetoshi IKENO, 
Daisuke MIYAMOTO, Yuko Okamura-OHO, Hirozumi NISHIBE, Akira SATO, Teiichi FURUICHI, Ryohei KANZAKI (PDF)
30           
     
  Recording the Analyses single neuron morphology on database
Tomoki KAZAWA, Yoshihiro OKUMURA (PDF)
31           
     
  Brain Atlas Hackathon 2015: Pipeline Development for Brain Atlas Registration using The IPython Notebook Computational Environment
Alexander WOODWARD, 
Joshua EMOTO, Yoko MORII, Masaomi NISHIMURA, Hiromichi TSUKADA (PDF)
32           
     
  Preprocessing the confocal microscopy images for Neuron Segmentation
Tetsuya FUKUDA,
 Heewon PARK,  Hiroaki YAMAZAKI,  Tomoki KAZAWA  (PDF)
33           
     
  Improvement of a Web-based Application for 3D Brain Atlas Visualization
Masahide MAEDA, 
 Keiji MATSUDA,  Kenichi UENO (PDF)
34           

Tutorial Session  A method for construction and application of standard brain model based on the confocal images 
35           
     
  A method for construction and application of standard brain model based on the confocal images
Hidetoshi IKENO, 
Daisuke MIYAMOTO, Tomoki KAZAWARyohei KANZAKI (PDF)
36           
   

Poster Session

37           
  BSI Neuroinformatics Contents Report 2015
Yoko YAMAGUCHI, Tomoki FUKAI, Atsushi IRIKI, Tomomi SHIMOGORI, Keiichi KITAJO, Hajime HIRASE, Naotaka FUJII,Taro TOYOIZUMI, Shiro USUI, Itsuko ISHII (PDF)
38           
     
  Brain Transcriptome Database (BrainTx, formerly CDT-DB)
Akira SATO, Yo SHINODA, Tetsushi SADAKATA, Noriyuki MORITA, Michisuke YUZAKI, Takafumi INOUE, Hirozumi NISHIBE, Yoko YAMAGUCHI, Teiichi FURUICHI (PDF)


39           
     
  Kinase-Associated Neural Phospho-Signaling Database: XooNIps based Neuroinformatics Database of Protein Phosphorylation
Takayuki KANNON, Junichiro YOSHIMOTO, Mutsuki AMANO, Tomoki NISHIOKA, Shiro USUI, Kozo KAIBUCHI
(PDF)
40           
     
  The Invertebrate Brain Platform (IVB-PF)- comparative expositions and data collection about invertebrate brain -
Ryohei KANZAKI, Tomoki KAZAWA, Hidetoshi IKENO, Daisuke MIYAMOTO, Yoko YAMAGUCHI (PDF)
41               
     
  Visiome Platform: Introduction of a database for vision research by collection, education, and “collaboration” of computational models
Shunji SATO, Yoshimi KAMIYAMA, Shin'ya NISHIDA, Shigeki NAKAUCHI, Izumi OHZAWA, Masao TACHIBANA, Takao SATO, Akiyoshi KITAOKA, Hiroshi ASHIDA, Hayaru SHOUNO, Kazushi MARUYA, Manabu TANIFUJI, Satoshi SHIOIRI, Yoko YAMAGUCHI, Shiro USUI (PDF)
42           
     
  Neuroinformatics Infrastructure for Primate Brain Data as Heterogeneous Big Data
Yoko MORII, Yoshihiro OKUMURA, Masahide MAEDA, Alexander WOODWARD, Hideki OKA, Masahiko MORITA, Takehiro TAWARA, Masaomi NISHIMURA, Hideo YOKOTA, Yoko YAMAGUCHI (PDF)
43           
     
  The DOI registration support system for research data in J-Node developed with the XooNIps ver.4.00
Yui ISONO, Yoshihiro OKUMURA, Yoko YAMAGUCHI
(PDF)
44           
     
  An Ontology-Based Model Search Extended to Deal with Accessibility Issues of Neuroinformatics Metadata with Multidirectional Attributes
Yoshiyuki ASAI, Yoshiyuki KIDO, Kyota KAMIYOSHI, Taishin NOMURA, Hiroaki WAGATSUMA
(PDF)
45           
     
  Driving Distraction Design Based on a Tablet Computer: An Application-Driven Approach
Mayu ICHIKI, Guangyi AI, Jonathan Shi Khai OOI, Hiroaki WAGATSUMA (PDF)
46           
     
  Analysis and optimization of multi-compartment Hodgkin-Huxley type model simulations for processing with SIMD instructions
Daisuke MIYAMOTO, Tomoki KAZAWA, Ryohei KANZAKI (PDF)


47           
     
  Response prediction of an insect's olfactory receptor neuron by using structural parameters of odorant for cell-based odor sensor design
Yuki HARADA, Tomoki KAZAWA, Ryohei KANZAKI, Takamichi NAKAMOTO (PDF)
48           
     
  Solving single neuron properties with multi-compartment model simulation and CMA-ESTomoki KAZAWA, Akihiko GOTO, Daisuke MIYAMOTO, Ryohei KANZAKI (PDF) 49           
     
  Building realistic neural circuit model in the moth antennal lobe for odor source localization
Heewon PARK, Tomoki KAZAWA, Daisuke MIYAMOTO, Ryohei KANZAKI
(PDF)
50           
     
  Point process modeling of perceptual switching
Takeru MATSUDA, Keiichi KITAJO, Yoko YAMAGUCHI, Fumiyasu KOMAKI
(PDF)
51           
     
  A model of goal direction computation using concurrent reactivation of place cells, grid cells and band-like stripe cells
Jonathan Kar-Sing LAI, Keiichi KITAJO, Yoko YAMAGUCHI, Fumiyasu KOMAKI
(PDF)
52           
     
  Importance of Upstream Design in the Development of Linkage Mechanisms and Its Methodologies with Multibody Dynamics
Masato UCHIDA, Kazuma KOMODA, Hiroaki WAGATSUMA (PDF)
53           
     
  Construct learning Neural Network with biophysically detailed multi-compartment model
Tetsuya FUKUDA, Tomoki KAZAWA, Daisuke MIYAMOTO, Ryohei KANZAKI (PDF)

54           
     
  Three-dementional reconstruction of brain strucures in the common marmoset
Tsutomu HASHIKAWA, Reiko NAKATOMIYoko YAMAGUCHI, Atsushi IRIKI (PDF)
55           
     
  Exploring the structural principles of the brain by cataloguing 3D reconstructions of insect brains
Yoichi SEKI, Misuzu MORI, Megumi MISAWAKana AKIMOTOHiroyoshi MIYAKAWA, Takako MORIMOTO (PDF)
56           
     
  Detection of Spatiotemporal Neural Activity Patterns by Edit Similarity
Keita WATANABE, Tatsuya HAG, Tomoki FUKAI (PDF)
57           
     
  Shared sub-sequences in multiple spatiotemporal patterns in living neuronal network
Yuichiro YADA, Ryohei KANZAKI, Hirokazu TAKAHASHI (PDF)
58           
     
  Estimation of Neuronal Migration Distance in Dissociated Culture on High Density CMOS Micro-Electrode Array
Ryuichi YANO,
Misuzu MORIMegumi MISAWAKana AKIMOTOHiroyoshi MIYAKAWA,Takako MORIMOTO (PDF)
59           
     
  Investigation of Cognitive Workload in Distracted Driving with EEG Measurements
Guangyi AI,
Jonathan Shi Khai OOIMayu ICHIKIHiroaki WAGATSUMA (PDF)
60           
     
  Cognitive Workloads Depending on Tasks and its Difficulty Levels Revealed on a Portable Electroencephalogram Device
Jonathan Shi Khai OOI,
Siti Anom AHMAD, Guangyi AI, Mayu ICHIKI, Hiroaki WAGATSUMA (PDF)
61           
     
  Chord texture modulates the phase synchrony in rat auditory cortex
Tomoyo Isoguchi SHIRAMATSU, Ryohei KANZAKI, Hirokazu TAKAHASHI (PDF)
62           
     
  Modulation of thalamo-cortical information transfer by vagus nerve stimulation in auditory oddball paradigm in rats
Rie HITSUYU,
Tomoyo Isoguchi SHIRAMATSUKotaro ISHIZU,Ryohei KANZAKIKenji IBAYASHIKensuke KAWAIHirokazu TAKAHASHI (PDF)
63           
     
  The analysis of visual feedback on odor-source searching behavior of male silkworm moth from the activity of neck motor neurons
Hirotoshi KONO,
Ryo MINEGISHIShunsuke SHIGAKIDaisuke KURABAYASHI (PDF)
64           
     
  The effect of the time of day on mice behaviors measured in a comprehensive behavioral test battery
Keizo TAKAO, Hirotaka SHOJISatoko HATTORITsuyoshi MIYAKAWA (PDF)
65           
     
  Development and evaluation of simultaneous measurement device between biosignal and behavior of animal
Shunsuke SHIGAKI, Shunpei FUKUSHIMADaisuke KURABAYASHI, Ryohei KANZAKI (PDF)
66           
     
  Accuracy improvement of a software for tracking multiple bees, K-Track
Toshifumi KIMURA,
Mizue OHASHIKarl CRAILSHEIMThomas SCHMICKLRyuichi OKADA, Hidetoshi IKENO (PDF)
67           
     
  Development of a new system for quantitative evaluation of movement disorders
Shinji KAKEI, Jongho LEE, Takeru HONDA,Takahiro ISHIKAWA,Yoko YAMAGUCHI (PDF)
68           
     
  FORCE learning implemented with a living neuronal network
Shusaku YASUDA, Yuichiro YADA, Takeshi MITARyohei KANZAKI, Hirokazu TAKAHASHI (PDF)
69           
     
  3D morphology design of the CFRP support device for brain-body coordination prosthetics
Akira MATSUDA Hiroki ASHIDA, Takeshi SAITO, Hiroaki WAGATSUMA (PDF)
70           
     

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