Advances in Neuroinformatics II

 

2nd INCF Japan Node International Workshop Advances in Neuroinformatics 2014 Abstracts

November 2014

Edited by
Yoko YAMAGUCHI

Published by
Neuroinformatics Japan Center, RIKEN Brain Science Institute
2-1 Hirosawa Wako, Saitama 351-0198, Japan

Official page
URL: https://www.neuroinf.jp/aini2014

 

 

 

 

 



   

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Each paper with DOI is available below.
 

Table of Contents

 
Plenary Lecture: Present and Future of Data Sharing in Brain Science 7           
     
  Data Sharing and Collaboration through Multi-Level Brain Atlases
Xavier VASQUES (PDF
8           
       
  Sharing Semantically Meaningful Neuroimaging Provenance and Derived Data using the Neuroimaging Data Model (NIDM)
David B. KEATOR (PDF
9           
     
  Clinical and Translational Application of Neuroimaging in Psychiatric Disorders
Kiyoto KASAI (PDF
10, 11        
     
  Improving Workflows and Data Management for the Analysis of Electrophysiological Data
Michael DENKER (PDF)
12           
     
  Resource Sharing at Multiple Level in the Era of Integrated Bioscience
Taishin NOMURA (PDF)
13           
     

Regular I: Innovations in Neuroinformatics Platforms


14           
  Neural PhosphoSignaling Database: A new omics database supporting neuroscience research
Junichiro YOSHIMOTO, 
Takayuki KANNON Mutsuki AMANO, Tomoki NISHIOKA, Shiro USUI, Kozo KAIBUCHI (PDF)
15           
     
  Dissociation and evaluation of outputs from predictive and feedback controllers for tracking movements in normal subjects and patients with neurological disorders
Shinji KAKEI,
Jongho LEE, Tadashi YAMAZAKI, Takahiro ISHIKAWA (PDF)
16           
     
  Brain Science Dictionary
Yasunori HAYASHI (PDF)
 
    17           
  Expectations for Brain Research by Industrial Companies - Preliminary Survey using Internet Questionnaire System -
Hideki KASHIOKA, Yukiko NOTA, Shinobu MASAKI, Kazuhisa NIKI, Hiroki TANABE, Yasuyuki TAKI
 Jiro OKUDA, Hideo EDA, Yoko YAMAGUCHI, Kang CHENG, Ryoji SUZUKI (PDF)
18           
     
  Next Generation XooNIps
Takayuki KANNON, 
Yoshihiro OKUMURA, Shiro USUI (PDF)
19           
     

Regular II: Large Scale and Quantitative Model Simulations


20           
  Realtime simulation of one-million spiking neurons in a realistic cerebellar model using multiple GPUs
Tadashi YAMAZAKI (PDF)
21           
     
  Acceleration of NEURON simulator for morphological detailed multi-compartment Hodgkin-Huxley type simulation toward real-time speed
Daisuke MIYAMOTO, 
Tomoki KAZAWA, Akihiko GOTO, Ryohei KANZAKI (PDF)
22           
     
  Multilevel neural network modeling that integrates spike train data using PhysioDesigner
Yoshiyuki ASAI, 
Takeshi ABE, Li LI, Yoshihisa KURACHI, Hiroaki KITANO (PDF)
23           
     
  Cell-type-dependent action potentials of mouse taste bud cell models
Katsumi TATENO, 
Yoshitaka OHTUBO, Kenji KIMURA, Keita TAKEUCHI, Takashi KUMAZAWA, Kiyonori YOSHII (PDF)
24           
     
  Constructing multi-compartment parallelized simulation from olfactory input to premotor command generation of silkmoth brain
Tomoki KAZAWA, 
Daisuke MIYAMOTO, Akihito GOTO, Heewon PARK, Hidetoshi IKENO, Ikuko NISHIKAWA, Ryohei KANZAKI (PDF)
25           
     
  Unifying computational models for visual attention yields better scores than state-of-the-art models
Xuehua HAN,
Shunji SATOH, Daiki NAKAMURA. Kazuki URABE (PDF)
26           
     

Regular III: Brain Morphology and Functions


27           
  Large-Scale Tracking and Modeling of Neural Networks in 3D Micrographs
Henrik SKIBBE, 
Kei ITO, Shin ISHII (PDF)
28           
     
  Data Analysis Pipeline for Neuroscience Data Application to Morphological and Electrical Neuron Features
Xavier VASQUES, Sean HILL (PDF)
29           
     
  Integrated Analysis of Expression Maps and Co-Expression Networks Using a Dataset of ViBrism DB
Yuko OKAMURA-OHO, 
Kazuro SHIMOKAWA, Masaomi NISHIMURA, Satoko TAKEMOTO, Masahiko MORITA, Hideo YOKOTA (PDF)
30           
     
  Cerebellar Development Transcriptome Database (CDT-DB) Profiling of spatio-temporal gene expression during postnatal development of mouse brain
Yo SHINODA, 
Akira SATO, Michinori KOEBIS, Tetsushi SADAKATA Noriyuki MORITA, Michisuke YUZAKI, Takafumi INOUE, Hirozumi NISHIBE, Yoko YAMAGUCHI, Teiichi FURUICHI (PDF)
31           
     

Exhibition I: Innovations in Neuroinformatics Platforms


32           
  Recent Activities of Neuroimaging Platform
Kang CHENG,
Ryoji SUZUKI, Shinobu MASAKI, Kazuhisa NIKI, Hiroki TANABE, Yasuyuki TAKI, Jiro OKUDA, Hideo EDA, Hideki KASHIOKA, Yoko YAMAGUCHI (PDF)
33           
     
  A Development of the Xoops Search Module Associated with XooNIps for Boosting a Visibility of Relations Among Registered PF items
Hiroaki WAGATSUMA (PDF)
34           
     
  MFC-based SSVEP Stimulus Software Program Ver 1.0, 2.0, 3.0
Guangy AI,
Kiyohisa NATSUME, Hiroaki WAGATSUMA (PDF)
35           
     
  Exploring of Neurorobotic Approaches Bridges Between Human Measurement Data and Model-Based Analyses - A Case of Standing-Up Motions for Rehabilitation in Developmental Stages of Cerebral Palsy and Convalescence Stage of Stroke
Gyanendra NATH TRIPATHI,
Hiroaki WAGATSUMA, Yuya KATSUKI, Kenta SHOJI (PDF)
36           
     

Exhibition II: Large Scale and Quantitative Model Simulations


37           
  Subject-independent decoding from EEG through sparse learning of spatial bases common across sessions and subjects
Hiroshi MORIOKA, 
Atsunori KANEMURA, Jun-ichiro HIRAYAMA, Takeshi OGAWA, Shigeyuki IKEDA, Motoaki KAWANABE, Shin ISHII (PDF)
38           
     
  Cerebellar Platform
Shinji KAKEI,
Tadashi YAMAZAKI, Yutaka HIRATA, Soichi NAGAO, Shiro USUI, Yoko YAMAGUCHI (PDF)
39           
     
  Visiome Platform: a comprehensive database for vision research
Shunji SATOH, 
Yoshimi KAMIYAMA, Shin'ya NISHIDA, Shigeki NAKAUCHI, Izumi OHZAWA, Masao TACHIBANA, Takao SATO, Akiyoshi KITAOKA, Hiroshi ASHIDA Hayaru SHOUNOKazushi MARUYA, Manabu TANIFUJI, Satoshi SHIOIRI, Yoko YAMAGUCHI, Shiro USUI (PDF)
40           
     
  Simulation platform: Application server for testing and sharing mathematical model and experimental data
Hidetoshi IKENO,
Yoshimi KAMIYAMA, Akito ISHIHARA Yutaka HIRATA, Shunji SATOH, Tadashi YAMAZAKI, Hiroaki WAGATSUMA, Yoshihiro OKUMURA, Keiichiro INAGAKITakayuki KANNON, Yoshiyuki ASAI, Yoko YAMAGUCHI, Shiro USUI (PDF)
41           
     
  Brain-Machine Interface platform
Toshio IIJIMA,
Ken-ichiro TSUTSUI, Yasuharu KOIKE, Yoshio SAKURAI, Hajime MUSHIAKE, Mitsuo KAWATO, Yoko YAMAGUCHI (PDF)
42           
     

Exhibition III: Brain Morphology and Functions


43           
  Cerebellar Development Transcriptome Database (CDT-DB)
Akira SATO,
Yo SHINODA, Michinori KOEBIS, Tetsushi SADAKATA, Noriyuki MORITA, Michisuke YUZAKI, Takafumi INOUE, Hirozumi NISHIBE, Yoko YAMAGUCHITeiichi FURUICHI (PDF)
44           
     
  BSI-Neuroinformatics Project
Yoko YAMAGUCHI, 
Tomoki FUKAI, Atushi IRIKI, Tomomi SHIMOGORI, Keiichi KITAJO, Hajime HIRASE, Naotaka FUJII, Taro TOYOIZUMI, Shiro USUI, Haruyuki IWABUCHI (PDF)
45           
     
  ViBrism Database: a Platform for analysis of Expression Maps and Co-Expression Networks
Yuko OKAMURA-OHO, Masahiko MORITA, Hideo YOKOTA, Shinji KONDO, Kazuro SHIMOKAWA, Satoshi OOTA, Teiichi FURUICHI, Yoko YAMAGUCHI (PDF)
46           
     
  Mouse Phenotype Database
Keizo TAKAO, Hirotaka SHOJI, Satoko HATTORI, Tsuyoshi MIYAKAWA (PDF)
47           
     
  The Invertebrate Brain Platform (IVB-PF) - comparative expositions and data collection about invertebrate brain -
Ryohei KANZAKI,
Tomoki KAZAWA, Akira TAKASHIMA, Sakiko SIGA, Hidetoshi IKENO, Yoko YAMAGUCHI (PDF)
48           

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