J-Node Hackathon 2018 September

J-Node Hackathon is a collaborative event organized by INCF Japan Node to facilitate the developments in neuroinfomatics field, which concerns with diverse and huge neuroscience data using database technology, computational tools and the various other software applications on local PC and on the internet.

Participants in our past hackathons are not only INCF Japan node members, but are national project members of SPPBS and Brain/MINDS, collaborative/cooperative neuroscientists, students and software engineers. We welcome anyone who are interested in Neuroinformatics. Please visit https://www.neuroinf.jp/program/j-node-hackathon.html for the details of our past hackathons. Our goal in this event are mainly collaborations, promotions and standardizations of neuroscience databases. So far, we pursued many themes, the brain image standardization, ontology base organization of databases, developments of client and server software towards standardizations and collaboration among neuroinfomatical databases inside and outside J-node. However, we welcome new ideas and suggestions how to organize big data using new framework for making comparison between data, new UI, new modeling methods, some applications of your daily neuroinformatics work and so on.

 

Leaflet (English)  Leaflet (Japanese)

 

About

Date:

 Ideathon     September 4 (Tue), 2018  10:00AM - 5:00PM

 Hackathon   September 21 (Fri), 2018  10:30AM -23 (Sun) 5:00PM, 2018

Venue:

   Ideathon       RIKEN Brain Science East Building 1F Seminar room  http://www.brain.riken.jp/en/access/

                      Wako-shi Station (Tobu Tojo line / Subway Yurakucho line /Subway Fukutoshin line) 20 minutes' walk

   Hackathon    Shonan Village Center http://www.shonan-village.jp/english/ 

                      access http://www.shonan-village.jp/english/access.html

   Please take the bus from the followings.

  •  From either JR Zushi or Keikyu Shin-Zushi station. (bus leaving JR Zushi station at 9:30am, Keikyu Shin-Zushi station at 9:32am)
    Take bus no. 16 for Shonan Village, which leaves from bus stop number 1 at both stations (approx. 30 min.). A one way bus ticket costs JPY 350.
  •  From Keikyu Shioiri station. (bus leaving at 9:33am)
    Take bus no. 16 for Shonan Village, which leaves from bus stop number 2 (approx. 35 min.). A one way bus ticket costs JPY 380 All buses are The destination is Shonan Village Center.

U R L: https://www.neuroinf.jp/hackathon2018/september.html (We will update from time to time)

Presentors:

 (Give a lecture on Ideathon)

  • Akito ISHIHARA           Chukyo University       "Development of Neuroinfomatics Tutorial Using SimPF"
  • Yoshinobu KANO          Shizuoka Univeristy     "Text Mining Resources for Searching Brain Functions and Coordinates from Neuroscience Papers"
  • Norio KOBAYASHI        RIKEN                        "Towards development of novel brain science data platform through an open science approach"       
  • Alexander WOODWARD RIKEN       "An Introduction to The Virtual Brain (TVB) and its Application to Non-human Primate Data"

 (Give a lecture on Hackathon)

  • Junichiro YOSHIMOTO  NAIST                        "Toward mining of putative kinase-associated pathways using KANPHOS database"
  • Jun IGARASHI             RIKEN                        "A large-scale simulation of a cortico-thalamo-cerebello circuit using K computer"
                                                                        (Jun Igarashi, Hiroshi Yamaura, Tadashi Yamazaki)

Organized by: Neuroinformatics Unit, RIKEN Center for Brain Science

Committee: J-Node Hackathon Working Group

  • Tomoki KAZAWA(Group Leader) (The University of Tokyo)
  • Hidetoshi IKENO(University of Hyogo)
  • Teiichi FURUICHI (Tokyo University of Science)
  • Yoshiyuki ASAI (Yamaguchi University)
  • Akira SATO (Tokyo University of Science)
  • Yukiko NOTA (ATR-Promosions Brain Activity Imaging Center)
  • Yoshihiro OKUMURA (RIKEN CBS)
  • Itsuko ISHII (RIKEN CBS)
  • Ayumi HONDA (RIKEN CBS)
  • Yoko YAMAGUCHI (RIKEN CBS)

Number of participants: 30 at most

Application method: Please fill in the application form and send it to J-Node Hackathon secretariat

Contact: office@ni.riken.jp (J-Node Hackathon secretariat)

Deadline of registration submission: August 27(Mon), 2018  ※Deadline extended    Registration is now closed

  • In principle, organizer shall support accommodation fee for 2 nights, 3 lunches and 2 dinner for the period of Sep.21 to 23 for Hackathon.
  • Please contact us if you need accommodation on the previous night of Ideathon/Hackathon.
  • We ask you to pay for your own travel expenses, however several participants may be supported. If you wish to request for the support, please fill in the application form and send it to J-Node Hackathon secretariat. After it has been reviewed whether or not your purpose of participation to this Ideathon/Hackathon meets the purpose and the necessity of the support, you will be notified the result around a week after the deadline.
  • We would be very grateful if your affiliation could support for your travelling fee. If so please fill in the check box.

  • Students need to get permission from their supervisors. Please fill in the application form including your supervisor’s name and the contact information. Also, please include your supervisor’s e-mail address to CC.
  • The presentation can be made in either in English or Japanese, but please prepare the materials in English.
  • The policy on research achievements for the Hackathon is as shown below:
    • When an achievement involves alteration of an existing software platform, licensing is subject to the original software.
    • When an achievement is newly developed by an individual, it is released and managed in an open source public repository, such as J-Node software center or GitHub.
      • In some circumstances, full disclosure may not be available due to research ethics.
    • Copyright of an achievement belongs to the developer, but it will be treated as a result of J-Node (NIU) activity.
    • Lecture materials presented at Ideathon etc. will be disclosed at this website in the possible range, just like other developed achievements.
  • If you wish to participate this workshop partially, please consult us.
  • We will have a social gathering on 9/22(Sat) after the Hackathon. Please join us (fees at your own expense).

Ideathon

 
Day Hour Title Lecturer  

9/4(Tue)

9:30~ Venue : RIKEN CBS East Building 1F Seminar room  
10:00~10:05 Opening Remark Tomoki KAZAWA(The University of Tokyo) PDF
10:05~10:15

Development of Standards for Open Neuroscience

Yoko YAMAGUCHI (RIKEN)  
10:15~11:00 Text Mining Resources for Searching Brain Functions and Coordinates from Neuroscience Papers Yoshinobu KANO (Shizuoka University)  
11:00~11:45 Towards development of novel brain science data platform through an open science approach Norio KOBAYASHI (RIKEN) PDF
11:45~12:30 Lunch  
12:30~13:00 An Introduction to The Virtual Brain (TVB) and its Application to Non-human Primate Data Alexander WOODWARD (RIKEN)  
13:00~13:30 Development of Neuroinfomatics Tutorial Using SimPF Akito ISHIHARA (Chukyo University) PDF
13:30~14:30 Flash talk  
14:30~16:30 Group discussion  
16:30~17:00 Report of discussion  

  【Flash Talk】
1. Hidetoshi IKENO (University of Hyogo)PDF
2. Yoshihiro OKUMURA (RIKEN CBS)PDF
3. Tomoki KAZAWA (The University of Tokyo)PDF
4. Satoshi TANAKA (Fukuoka University)PDF
5. Yoshihide TAMORI ( NeuroCreative Lab )PDF
6. Masahide MAEDA (RIKEN CBS)PDF
7. Rui GONG (RIKEN CBS)PDF

Hackathon

 
Day Hour Title Lecturer

9/21(Fri)

10:15 Venue:Shonan Village Center Conference Room 2
10:15~10:20 Opening Remark Tomoki KAZAWA(The University of Tokyo)
10:20~10:50 Toward mining of putative kinase-associated pathways using KANPHOS database Junichiro YOSHIMOTO (NAIST)
10:50~11:20  A large-scale simulation of a cortico-thalamo-cerebello circuit using K computer.
(Jun Igarashi, Hiroshi Yamaura, Tadashi Yamazaki)
Jun IGARASHI (RIKEN)
11:20~21:00 Self-introduction, Grouping, Development

9/22(Sat)

7:00~21:00 Development

9/23(Sun)

7:00~15:00 Development
15:00~16:45 Presentation time (Report of activity in the hackathon)
17:00 Closing

その他

 

Other Documents

 

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